![]() The Search Box (Figure 4) is located on the upper left of the page by default and can be used to find a gene or location within the selected assembly. This box appears on the upper right of the page when the left sidebar is hidden. Search box with search results shown below. These added scaffolds will disappear from the menu when you click "Reset All" on the upper right or start a new genome browser session.įigure 4. The "More." option at the bottom of the menu links to the NCBI Nucleotide search results page listing all scaffolds for the given assembly.Ĭhromosomes or scaffolds that have been viewed in a genome browser session (including scaffolds not in the top 30) will be listed in the selection menu under a separate sub-heading for ease of future access. ), the menu will contain up to the largest 30 scaffolds/contigs by size. For assemblies that lack assembled nuclear chromosomes, (e.g. For chromosome-level assemblies, the chromosomes in the assembly will be listed in the menu. The Chromosome Indicator appears as a drop-down menu that allows you to navigate to different chromosomes or scaffolds within the assembly. You can use this menu to switch to view a different assembly for the selected organism. ![]() The Assembly Indicator appears as a dropdown menu when there are multiple assemblies available in GDV. ![]() The current sequence accession and coordinates appear on the line below. The Assembly and Chromosome that are viewed in the genome browser are indicated on the top center of the page (Figure 3). Assembly and chromosome indicator/selector menu on the top of the browser page. Note that the search box is in a different position on the upper right.įigure 2C: Switch Button to hide/reveal the left sidebar.īelow is an overview description of the principal widgets or elements on the page.įigure 3. To return to the top level tree after zooming in, click the '> icon or pressing "[" again will reveal the left sidebar options once again.įigure 2A: A page overview with individual page elements highlighted in different colors.įigure 2B: A page overview with the left sidebar hidden and page elements highlighted. Clicking on these nodes will zoom the tree to the next deeper level. Hovering over tree nodes with '+' signs will open a tooltip that reveals the number of additional nodes with assembly data. You can search directly for common or scientific names using the search box, or click on nodes in the tree to explore different taxa. The GDV home page (Figure 1A) allows you find and select organisms and assemblies available to view in the browser.
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